HL_5AJ0_118

3D structure

PDB id

5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo electron microscopy of actively translating human polysomes (POST state).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AUUGAAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72253.1

Basepair signature

cWW-bif-R-R-R-R-R

Number of instances in this motif group

42

Unit IDs

5AJ0|1|Bv|A|31
5AJ0|1|Bv|U|32
5AJ0|1|Bv|U|33
5AJ0|1|Bv|G|34
5AJ0|1|Bv|A|35
5AJ0|1|Bv|A|36
5AJ0|1|Bv|A|37
5AJ0|1|Bv|A|38
5AJ0|1|Bv|U|39

Current chains

Chain Bv

tRNA

Nearby chains

Chain B1

Small subunit ribosomal RNA; SSU rRNA

Chain BQ

40S ribosomal protein S16

Chain Bw

Transfer RNA; tRNA

Chain Bx

mRNA