HL_5AJ0_121
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ0_121 not in the Motif Atlas
- Homologous match to HL_4V90_033
- Geometric discrepancy: 0.2758
- The information below is about HL_4V90_033
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5AJ0|1|Bw|A|31
5AJ0|1|Bw|U|32
5AJ0|1|Bw|U|33
5AJ0|1|Bw|G|34
5AJ0|1|Bw|A|35
5AJ0|1|Bw|A|36
5AJ0|1|Bw|A|37
5AJ0|1|Bw|A|38
5AJ0|1|Bw|U|39
Current chains
- Chain Bw
- tRNA
Nearby chains
- Chain B1
- Small subunit ribosomal RNA; SSU rRNA
- Chain BF
- 40S ribosomal protein S5
- Chain BO
- 40S ribosomal protein S14
- Chain Bc
- 40S ribosomal protein S28
- Chain Bv
- Transfer RNA; tRNA
- Chain Bx
- mRNA
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