HL_5AJ0_128
3D structure
- PDB id
- 5AJ0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo electron microscopy of actively translating human polysomes (POST state).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- AUCUCGUCUGAUCU
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5AJ0_128 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.1775
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5AJ0|1|A4|A|32
5AJ0|1|A4|U|33
5AJ0|1|A4|C|34
5AJ0|1|A4|U|35
5AJ0|1|A4|C|36
5AJ0|1|A4|G|37
5AJ0|1|A4|U|38
5AJ0|1|A4|C|39
5AJ0|1|A4|U|40
5AJ0|1|A4|G|41
5AJ0|1|A4|A|42
5AJ0|1|A4|U|43
5AJ0|1|A4|C|44
5AJ0|1|A4|U|45
Current chains
- Chain A4
- 5S ribosomal RNA
Nearby chains
- Chain A2
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- 60S ribosomal protein L5
- Chain AJ
- 60S ribosomal protein L11
Coloring options: