HL_5AJ4_029

3D structure

PDB id

5AJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 55S mammalian mitoribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGUGGCAAAA

Length

10 nucleotides

Bulged bases

5AJ4|1|BA|G|293, 5AJ4|1|BA|A|297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AJ4_029 not in the Motif Atlas

Homologous match to HL_7RQB_023

Geometric discrepancy: 0.0921

The information below is about HL_7RQB_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.6

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

6

Unit IDs

5AJ4|1|BA|U|290
5AJ4|1|BA|G|291
5AJ4|1|BA|U|292
5AJ4|1|BA|G|293
5AJ4|1|BA|G|294
5AJ4|1|BA|C|295
5AJ4|1|BA|A|296
5AJ4|1|BA|A|297
5AJ4|1|BA|A|298
5AJ4|1|BA|A|299

Current chains

Chain BA

MITORIBOSOMAL 16S Ribosomal RNA

Nearby chains

Chain B7

MITORIBOSOMAL PROTEIN BL34M, MRPL34

Chain BE

MITORIBOSOMAL PROTEIN UL3M, MRPL3

Chain BW

MITORIBOSOMAL PROTEIN UL22M, MRPL22