HL_5AKA_004

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

5AKA|1|B|C|61

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_004 not in the Motif Atlas

Homologous match to HL_7RQB_001

Geometric discrepancy: 0.3193

The information below is about HL_7RQB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99167.2

Basepair signature

cWW-F-F-cSH-F-F

Number of instances in this motif group

6

Unit IDs

5AKA|1|B|U|59
5AKA|1|B|G|60
5AKA|1|B|C|61
5AKA|1|B|U|62
5AKA|1|B|A|63
5AKA|1|B|A|64
5AKA|1|B|U|65
5AKA|1|B|C|66
5AKA|1|B|U|67
5AKA|1|B|G|68

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain T

50S RIBOSOMAL PROTEIN L23

Chain X

50S RIBOSOMAL PROTEIN L29