HL_5AKA_023

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

5AKA|1|B|C|645

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_023 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.4974

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5AKA|1|B|U|641
5AKA|1|B|U|642
5AKA|1|B|A|643
5AKA|1|B|A|644
5AKA|1|B|C|645
5AKA|1|B|U|646
5AKA|1|B|G|647

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 1

50S RIBOSOMAL PROTEIN L33

Chain 3

50S RIBOSOMAL PROTEIN L35