HL_5AKA_026

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5AKA|1|B|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_026 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1756

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5AKA|1|B|U|779
5AKA|1|B|G|780
5AKA|1|B|A|781
5AKA|1|B|A|782
5AKA|1|B|A|783
5AKA|1|B|G|784
5AKA|1|B|G|785

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2