HL_5AKA_029

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

5AKA|1|B|U|958, 5AKA|1|B|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_029 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1471

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5AKA|1|B|U|955
5AKA|1|B|G|956
5AKA|1|B|C|957
5AKA|1|B|U|958
5AKA|1|B|A|959
5AKA|1|B|A|960
5AKA|1|B|C|961
5AKA|1|B|G|962

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain A

5S ribosomal RNA; 5S rRNA

Chain M

50S RIBOSOMAL PROTEIN L16