HL_5AKA_031

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5AKA|1|B|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_031 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.1237

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5AKA|1|B|C|1064
5AKA|1|B|U|1065
5AKA|1|B|U|1066
5AKA|1|B|A|1067
5AKA|1|B|G|1068
5AKA|1|B|A|1069
5AKA|1|B|A|1070
5AKA|1|B|G|1071
5AKA|1|B|C|1072
5AKA|1|B|A|1073
5AKA|1|B|G|1074

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain I

50S RIBOSOMAL PROTEIN L11