HL_5AKA_035

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_035 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.0976

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

140

Unit IDs

5AKA|1|B|G|1281
5AKA|1|B|U|1282
5AKA|1|B|G|1283
5AKA|1|B|A|1284
5AKA|1|B|A|1285
5AKA|1|B|A|1286
5AKA|1|B|A|1287
5AKA|1|B|G|1288
5AKA|1|B|C|1289

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 5

SIGNAL RECOGNITION PARTICLE PROTEIN

Chain N

50S RIBOSOMAL PROTEIN L17

Chain S

50S RIBOSOMAL PROTEIN L22