HL_5AKA_051

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

5AKA|1|B|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_051 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.2101

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5AKA|1|B|G|1910
5AKA|1|B|U|1911
5AKA|1|B|A|1912
5AKA|1|B|A|1913
5AKA|1|B|C|1914
5AKA|1|B|U|1915
5AKA|1|B|A|1916
5AKA|1|B|U|1917
5AKA|1|B|A|1918
5AKA|1|B|A|1919
5AKA|1|B|C|1920

Current chains

Chain B

23S ribosomal RNA

Nearby chains