HL_5AKA_054

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

ACGCCAGU

Length

8 nucleotides

Bulged bases

5AKA|1|B|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_054 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3552

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

5AKA|1|B|A|2142
5AKA|1|B|C|2143
5AKA|1|B|G|2144
5AKA|1|B|C|2145
5AKA|1|B|C|2146
5AKA|1|B|A|2147
5AKA|1|B|G|2148
5AKA|1|B|U|2149

Current chains

Chain B

23S ribosomal RNA

Nearby chains