HL_5AKA_055

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

5AKA|1|B|A|2211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_055 not in the Motif Atlas

Homologous match to HL_4WF9_048

Geometric discrepancy: 0.248

The information below is about HL_4WF9_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

5AKA|1|B|G|2209
5AKA|1|B|U|2210
5AKA|1|B|A|2211
5AKA|1|B|A|2212
5AKA|1|B|U|2213
5AKA|1|B|C|2214
5AKA|1|B|C|2215

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain Z

50S RIBOSOMAL PROTEIN L31