HL_5AKA_057

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

5AKA|1|B|A|2268, 5AKA|1|B|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_057 not in the Motif Atlas

Homologous match to HL_5J7L_187

Geometric discrepancy: 0.2129

The information below is about HL_5J7L_187

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

5AKA|1|B|C|2264
5AKA|1|B|U|2265
5AKA|1|B|A|2266
5AKA|1|B|A|2267
5AKA|1|B|A|2268
5AKA|1|B|G|2269
5AKA|1|B|A|2270
5AKA|1|B|G|2271
5AKA|1|B|U|2272
5AKA|1|B|A|2273
5AKA|1|B|A|2274
5AKA|1|B|C|2275
5AKA|1|B|G|2276

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain M

50S RIBOSOMAL PROTEIN L16

Chain W

50S RIBOSOMAL PROTEIN L27