HL_5AKA_061

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_061 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.0762

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5AKA|1|B|C|2374
5AKA|1|B|G|2375
5AKA|1|B|A|2376
5AKA|1|B|A|2377
5AKA|1|B|A|2378
5AKA|1|B|G|2379

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain O

50S RIBOSOMAL PROTEIN L18

Chain W

50S RIBOSOMAL PROTEIN L27