HL_5AKA_062

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

5AKA|1|B|A|2406

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_062 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.0957

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5AKA|1|B|U|2404
5AKA|1|B|G|2405
5AKA|1|B|A|2406
5AKA|1|B|A|2407
5AKA|1|B|U|2408
5AKA|1|B|G|2409
5AKA|1|B|G|2410
5AKA|1|B|A|2411
5AKA|1|B|A|2412
5AKA|1|B|G|2413

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain L

50S RIBOSOMAL PROTEIN L15