HL_5AKA_069

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5AKA|1|B|G|2751

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_069 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1168

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5AKA|1|B|C|2745
5AKA|1|B|U|2746
5AKA|1|B|G|2747
5AKA|1|B|A|2748
5AKA|1|B|A|2749
5AKA|1|B|A|2750
5AKA|1|B|G|2751
5AKA|1|B|C|2752
5AKA|1|B|A|2753
5AKA|1|B|U|2754
5AKA|1|B|C|2755
5AKA|1|B|U|2756
5AKA|1|B|A|2757
5AKA|1|B|A|2758
5AKA|1|B|G|2759

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain G

50S RIBOSOMAL PROTEIN L6