HL_5AKA_070

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

UUUAA

Length

5 nucleotides

Bulged bases

5AKA|1|B|U|2797, 5AKA|1|B|A|2799

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_070 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2443

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5AKA|1|B|U|2796
5AKA|1|B|U|2797
5AKA|1|B|U|2798
5AKA|1|B|A|2799
5AKA|1|B|A|2800

Current chains

Chain B

23S ribosomal RNA

Nearby chains