HL_5AKA_076

3D structure

PDB id

5AKA (explore in PDB, NAKB, or RNA 3D Hub)

Description

EM structure of ribosome-SRP-FtsY complex in closed state

Experimental method

ELECTRON MICROSCOPY

Resolution

5.7 Å

Loop

Sequence

ACUACGGU

Length

8 nucleotides

Bulged bases

5AKA|1|B|A|1535, 5AKA|1|B|C|1536

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5AKA_076 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3688

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5AKA|1|B|A|1532
5AKA|1|B|C|1533
5AKA|1|B|U|1534
5AKA|1|B|A|1535
5AKA|1|B|C|1536
5AKA|1|B|G|1537
5AKA|1|B|G|1538
5AKA|1|B|U|1539

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain 5

SIGNAL RECOGNITION PARTICLE PROTEIN