3D structure

PDB id
5AOX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human Alu RNA retrotransposition complex in the ribosome-stalling conformation
Experimental method
X-RAY DIFFRACTION
Resolution
2.04 Å

Loop

Sequence
GAACC*C
Length
6 nucleotides
Bulged bases
None detected
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5AOX_006 not in the Motif Atlas
Geometric match to HL_4V88_198
Geometric discrepancy: 0.2729
The information below is about HL_4V88_198
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_71121.1
Basepair signature
cWW-F
Number of instances in this motif group
24

Unit IDs

5AOX|1|F|G|65
5AOX|1|F|A|66
5AOX|1|F|A|67
5AOX|1|F|C|68
5AOX|1|F|C|101
*
5AOX|1|F|C|101

Current chains

Chain F
ALU JO CONSENSUS RNA

Nearby chains

Chain A
SIGNAL RECOGNITION PARTICLE 9 KDA PROTEIN
Chain C
ALU JO CONSENSUS RNA

Coloring options:


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