HL_5APN_009
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 5APN|1|5|G|304, 5APN|1|5|U|305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5APN_009 not in the Motif Atlas
- Geometric match to HL_4QLM_002
- Geometric discrepancy: 0.3348
- The information below is about HL_4QLM_002
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_77600.2
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5APN|1|5|G|303
5APN|1|5|G|304
5APN|1|5|U|305
5APN|1|5|A|306
5APN|1|5|A|307
5APN|1|5|A|308
5APN|1|5|U|309
5APN|1|5|U|310
5APN|1|5|C|311
5APN|1|5|C|312
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain N
- 60S ribosomal protein L15-A
- Chain a
- 60S ribosomal protein L28
- Chain i
- 60S ribosomal protein L36-A
- Chain o
- 60S ribosomal protein L42-A
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