HL_5APN_022

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

5APN|1|5|C|959, 5APN|1|5|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5APN_022 not in the Motif Atlas

Homologous match to HL_5TBW_022

Geometric discrepancy: 0.193

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5APN|1|5|C|958
5APN|1|5|C|959
5APN|1|5|U|960
5APN|1|5|C|961
5APN|1|5|A|962
5APN|1|5|G|963

Current chains

Chain 5

25S rRNA

Nearby chains

Chain a

60S ribosomal protein L28

Chain b

60S ribosomal protein L29