HL_5APN_027

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

5APN|1|5|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5APN_027 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.3514

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5APN|1|5|C|1239
5APN|1|5|A|1240
5APN|1|5|U|1241
5APN|1|5|G|1242
5APN|1|5|G|1243
5APN|1|5|A|1244
5APN|1|5|A|1245
5APN|1|5|G|1246
5APN|1|5|U|1247
5APN|1|5|C|1248
5APN|1|5|G|1249

Current chains

Chain 5

25S rRNA

Nearby chains