HL_5APN_029
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 5APN|1|5|A|1352, 5APN|1|5|U|1353, 5APN|1|5|G|1354, 5APN|1|5|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5APN_029 not in the Motif Atlas
- Homologous match to HL_8P9A_141
- Geometric discrepancy: 0.595
- The information below is about HL_8P9A_141
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_29762.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
5APN|1|5|U|1347
5APN|1|5|U|1348
5APN|1|5|G|1349
5APN|1|5|A|1350
5APN|1|5|U|1351
5APN|1|5|A|1352
5APN|1|5|U|1353
5APN|1|5|G|1354
5APN|1|5|A|1355
5APN|1|5|U|1356
5APN|1|5|G|1357
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain E
- 60S ribosomal protein L6-A
- Chain Q
- 60S ribosomal protein L18-A
- Chain e
- 60S ribosomal protein L32
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