HL_5APN_031

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

AAUGAGAACUU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5APN_031 not in the Motif Atlas

Geometric match to HL_1P6V_002

Geometric discrepancy: 0.3214

The information below is about HL_1P6V_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22031.2

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5APN|1|5|A|1461
5APN|1|5|A|1462
5APN|1|5|U|1463
5APN|1|5|G|1464
5APN|1|5|A|1465
5APN|1|5|G|1466
5APN|1|5|A|1467
5APN|1|5|A|1468
5APN|1|5|C|1469
5APN|1|5|U|1470
5APN|1|5|U|1471

Current chains

Chain 5

25S rRNA

Nearby chains

Chain P

60S ribosomal protein L17-A

Chain R

60S ribosomal protein L19-A

Chain d

60S ribosomal protein L31-A