HL_5APN_039
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- CACCUUUG
- Length
- 8 nucleotides
- Bulged bases
- 5APN|1|5|C|1762, 5APN|1|5|U|1763, 5APN|1|5|U|1764
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5APN_039 not in the Motif Atlas
- Geometric match to HL_6D12_002
- Geometric discrepancy: 0.2681
- The information below is about HL_6D12_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_48417.5
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 26
Unit IDs
5APN|1|5|C|1759
5APN|1|5|A|1760
5APN|1|5|C|1761
5APN|1|5|C|1762
5APN|1|5|U|1763
5APN|1|5|U|1764
5APN|1|5|U|1765
5APN|1|5|G|1766
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain x
- Probable metalloprotease ARX1
- Chain y
- Cytoplasmic 60S subunit biogenesis factor REI1
Coloring options: