HL_5APN_046
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- GUCUAAUUAAAAC
- Length
- 13 nucleotides
- Bulged bases
- 5APN|1|5|A|2138, 5APN|1|5|A|2139, 5APN|1|5|U|2140, 5APN|1|5|A|2144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5APN_046 not in the Motif Atlas
- Geometric match to HL_7A0S_045
- Geometric discrepancy: 0.2383
- The information below is about HL_7A0S_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_60266.1
- Basepair signature
- cWW-cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5APN|1|5|G|2134
5APN|1|5|U|2135
5APN|1|5|C|2136
5APN|1|5|U|2137
5APN|1|5|A|2138
5APN|1|5|A|2139
5APN|1|5|U|2140
5APN|1|5|U|2141
5APN|1|5|A|2142
5APN|1|5|A|2143
5APN|1|5|A|2144
5APN|1|5|A|2145
5APN|1|5|C|2146
Current chains
- Chain 5
- 25S rRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain j
- 60S ribosomal protein L37-A
- Chain y
- Cytoplasmic 60S subunit biogenesis factor REI1
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