HL_5APN_052

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5APN_052 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.1826

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

5APN|1|5|A|2535
5APN|1|5|A|2536
5APN|1|5|U|2537
5APN|1|5|U|2538
5APN|1|5|C|2539
5APN|1|5|A|2540
5APN|1|5|U|2541
5APN|1|5|U|2542
5APN|1|5|U|2543
5APN|1|5|U|2544

Current chains

Chain 5

25S rRNA

Nearby chains

Chain G

60S ribosomal protein L8-A

Chain g

60S ribosomal protein L34-A