HL_5APN_065

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5APN_065 not in the Motif Atlas

Geometric match to HL_5J7L_004

Geometric discrepancy: 0.1143

The information below is about HL_5J7L_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5APN|1|5|C|3025
5APN|1|5|G|3026
5APN|1|5|A|3027
5APN|1|5|G|3028
5APN|1|5|A|3029
5APN|1|5|G|3030

Current chains

Chain 5

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain m

Ubiquitin-60S ribosomal protein L40