HL_5APN_067

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

5APN|1|5|G|3116, 5APN|1|5|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5APN_067 not in the Motif Atlas

Homologous match to HL_5TBW_067

Geometric discrepancy: 0.1179

The information below is about HL_5TBW_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5APN|1|5|C|3110
5APN|1|5|U|3111
5APN|1|5|G|3112
5APN|1|5|A|3113
5APN|1|5|A|3114
5APN|1|5|C|3115
5APN|1|5|G|3116
5APN|1|5|C|3117
5APN|1|5|C|3118
5APN|1|5|U|3119
5APN|1|5|C|3120
5APN|1|5|U|3121
5APN|1|5|A|3122
5APN|1|5|A|3123
5APN|1|5|G|3124

Current chains

Chain 5

25S rRNA

Nearby chains

Chain H

60S ribosomal protein L9-A

Chain O

60S ribosomal protein L16-A

Chain m

Ubiquitin-60S ribosomal protein L40