HL_5APN_069

3D structure

PDB id

5APN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

CGGAAAGG

Length

8 nucleotides

Bulged bases

5APN|1|5|A|3243, 5APN|1|5|A|3244

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5APN_069 not in the Motif Atlas

Homologous match to HL_5TBW_069

Geometric discrepancy: 0.2049

The information below is about HL_5TBW_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_24596.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

5APN|1|5|C|3240
5APN|1|5|G|3241
5APN|1|5|G|3242
5APN|1|5|A|3243
5APN|1|5|A|3244
5APN|1|5|A|3245
5APN|1|5|G|3246
5APN|1|5|G|3247

Current chains

Chain 5

25S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain O

60S ribosomal protein L16-A