HL_5APN_074
3D structure
- PDB id
- 5APN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast 60S ribosomal subunit in complex with Arx1, Alb1 and N-terminally tagged Rei1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.91 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 5APN|1|8|C|83, 5APN|1|8|C|84, 5APN|1|8|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5APN_074 not in the Motif Atlas
- Homologous match to HL_8C3A_230
- Geometric discrepancy: 0.5824
- The information below is about HL_8C3A_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
5APN|1|8|U|69
5APN|1|8|G|70
5APN|1|8|A|71
5APN|1|8|A|72
5APN|1|8|U|73
5APN|1|8|U|74
5APN|1|8|G|75
5APN|1|8|C|76
5APN|1|8|A|77
5APN|1|8|G|78
5APN|1|8|A|79
5APN|1|8|A|80
5APN|1|8|U|81
5APN|1|8|U|82
5APN|1|8|C|83
5APN|1|8|C|84
5APN|1|8|G|85
5APN|1|8|U|86
5APN|1|8|G|87
5APN|1|8|A|88
5APN|1|8|A|89
Current chains
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- 60S ribosomal protein L26-A
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
- Chain x
- Probable metalloprotease ARX1
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