HL_5CCX_003

3D structure

PDB id

5CCX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the product complex of tRNA m1A58 methyltransferase with tRNA3Lys as substrate

Experimental method

X-RAY DIFFRACTION

Resolution

2.1 Å

Loop

Sequence

GUUCA(1MA)(1MA)GUC

Length

10 nucleotides

Bulged bases

5CCX|1|N|C|56, 5CCX|1|N|A|57, 5CCX|1|N|U|60||A

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5CCX_003 not in the Motif Atlas

Homologous match to HL_5CCB_003

Geometric discrepancy: 0.4297

The information below is about HL_5CCB_003

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_67772.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5CCX|1|N|G|53
5CCX|1|N|U|54
5CCX|1|N|U|55
5CCX|1|N|C|56
5CCX|1|N|A|57
5CCX|1|N|1MA|58||A
5CCX|1|N|1MA|58||B
5CCX|1|N|G|59||A
5CCX|1|N|U|60||A
5CCX|1|N|C|61||A

Current chains

Chain N

tRNA3Lys

Nearby chains

Chain A

tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A

Chain B

tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6