HL_5CD1_003
3D structure
- PDB id
- 5CD1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of an asymmetric tetramer of human tRNA m1A58 methyltransferase in a complex with SAH and tRNA3Lys
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- GUUCAAGUC
- Length
- 9 nucleotides
- Bulged bases
- 5CD1|1|M|A|57
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5CD1_003 not in the Motif Atlas
- Geometric match to HL_5TBW_012
- Geometric discrepancy: 0.2918
- The information below is about HL_5TBW_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
5CD1|1|M|G|53
5CD1|1|M|U|54
5CD1|1|M|U|55
5CD1|1|M|C|56
5CD1|1|M|A|57
5CD1|1|M|A|58
5CD1|1|M|G|59
5CD1|1|M|U|60
5CD1|1|M|C|61
Current chains
- Chain M
- tRNA3Lys
Nearby chains
- Chain A
- tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A
- Chain E
- tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6
Coloring options: