HL_5CD1_004

3D structure

PDB id

5CD1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of an asymmetric tetramer of human tRNA m1A58 methyltransferase in a complex with SAH and tRNA3Lys

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

CAGUCGGUAG

Length

10 nucleotides

Bulged bases

5CD1|1|N|U|16, 5CD1|1|N|G|18, 5CD1|1|N|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5CD1_004 not in the Motif Atlas

Homologous match to HL_6ORD_035

Geometric discrepancy: 0.4146

The information below is about HL_6ORD_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_07951.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5CD1|1|N|C|13
5CD1|1|N|A|14
5CD1|1|N|G|15
5CD1|1|N|U|16
5CD1|1|N|C|17
5CD1|1|N|G|18
5CD1|1|N|G|19
5CD1|1|N|U|20
5CD1|1|N|A|21
5CD1|1|N|G|22

Current chains

Chain N

tRNA3Lys

Nearby chains

Chain B

tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6

Chain D

tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A

Chain E

tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6