HL_5CZP_102

3D structure

PDB id

5CZP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S termination complex containing E. coli RF2

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5CZP|1|RA|G|2751, 5CZP|1|RA|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5CZP_102 not in the Motif Atlas

Homologous match to HL_7RQB_066

Geometric discrepancy: 0.0623

The information below is about HL_7RQB_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.7

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

8

Unit IDs

5CZP|1|RA|C|2745
5CZP|1|RA|U|2746
5CZP|1|RA|G|2747
5CZP|1|RA|A|2748
5CZP|1|RA|A|2749
5CZP|1|RA|A|2750
5CZP|1|RA|G|2751
5CZP|1|RA|C|2752
5CZP|1|RA|A|2753
5CZP|1|RA|U|2754
5CZP|1|RA|C|2755
5CZP|1|RA|U|2756
5CZP|1|RA|A|2757
5CZP|1|RA|A|2758
5CZP|1|RA|G|2759

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R9

50S ribosomal protein L36

Chain RH

50S ribosomal protein L6