HL_5D8B_012
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- UUUGAUCCUGG
- Length
- 11 nucleotides
- Bulged bases
- 5D8B|1|UC|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5D8B_012 not in the Motif Atlas
- Homologous match to HL_4LFB_001
- Geometric discrepancy: 0.1053
- The information below is about HL_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_31940.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
5D8B|1|UC|U|12
5D8B|1|UC|U|13
5D8B|1|UC|U|14
5D8B|1|UC|G|15
5D8B|1|UC|A|16
5D8B|1|UC|U|17
5D8B|1|UC|C|18
5D8B|1|UC|C|19
5D8B|1|UC|U|20
5D8B|1|UC|G|21
5D8B|1|UC|G|22
Current chains
- Chain UC
- 16S ribosomal RNA
Nearby chains
- Chain FA
- 30S ribosomal protein S5
- Chain MA
- 30S ribosomal protein S12
Coloring options: