HL_5D8B_018

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

5D8B|1|UC|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_018 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1293

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5D8B|1|UC|G|259
5D8B|1|UC|G|260
5D8B|1|UC|U|261
5D8B|1|UC|A|262
5D8B|1|UC|A|263
5D8B|1|UC|U|264
5D8B|1|UC|G|265
5D8B|1|UC|G|266
5D8B|1|UC|C|267

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain RA

30S ribosomal protein S17

Chain UA

30S ribosomal protein S20