HL_5D8B_026

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_026 not in the Motif Atlas

Homologous match to HL_6CZR_085

Geometric discrepancy: 0.1147

The information below is about HL_6CZR_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20554.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

5D8B|1|UC|G|617
5D8B|1|UC|C|618
5D8B|1|UC|U|619
5D8B|1|UC|C|620
5D8B|1|UC|A|621
5D8B|1|UC|A|622
5D8B|1|UC|C|623

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain EA

30S ribosomal protein S4

Chain QA

30S ribosomal protein S16