HL_5D8B_033
3D structure
- PDB id
- 5D8B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.63 Å
Loop
- Sequence
- GAAGCAACGC
- Length
- 10 nucleotides
- Bulged bases
- 5D8B|1|UC|G|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5D8B_033 not in the Motif Atlas
- Homologous match to HL_4LFB_021
- Geometric discrepancy: 0.1677
- The information below is about HL_4LFB_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97521.1
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
5D8B|1|UC|G|963
5D8B|1|UC|A|964
5D8B|1|UC|A|965
5D8B|1|UC|G|966
5D8B|1|UC|C|967
5D8B|1|UC|A|968
5D8B|1|UC|A|969
5D8B|1|UC|C|970
5D8B|1|UC|G|971
5D8B|1|UC|C|972
Current chains
- Chain UC
- 16S ribosomal RNA
Nearby chains
- Chain ED
- Transfer RNA; tRNA
- Chain JA
- 30S ribosomal protein S9
- Chain KA
- 30S ribosomal protein S10
- Chain OA
- 30S ribosomal protein S14
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