HL_5D8B_035

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

5D8B|1|UC|G|1029

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_035 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3842

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

5D8B|1|UC|C|1027
5D8B|1|UC|G|1029
5D8B|1|UC|C|1030
5D8B|1|UC|G|1031
5D8B|1|UC|G|1033
5D8B|1|UC|G|1034

Current chains

Chain UC

16S ribosomal RNA

Nearby chains

Chain ZC

Large subunit ribosomal RNA; LSU rRNA