HL_5D8B_050

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5D8B|1|VC|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_050 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.0823

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5D8B|1|VC|G|194
5D8B|1|VC|A|195
5D8B|1|VC|A|196
5D8B|1|VC|A|197
5D8B|1|VC|C|198
5D8B|1|VC|A|199
5D8B|1|VC|U|200
5D8B|1|VC|C|201

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L15

Chain V

50S ribosomal protein L28