HL_5D8B_065

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

5D8B|1|VC|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_065 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.3356

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5D8B|1|VC|C|641
5D8B|1|VC|G|642
5D8B|1|VC|A|643
5D8B|1|VC|A|644
5D8B|1|VC|C|645
5D8B|1|VC|A|646
5D8B|1|VC|G|647

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain BA

50S ribosomal protein L35

Chain J

50S ribosomal protein L15

Chain Z

50S ribosomal protein L33