HL_5D8B_066

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GAGUGAGAC

Length

9 nucleotides

Bulged bases

5D8B|1|VC|A|712|||B

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_066 not in the Motif Atlas

Homologous match to HL_7RQB_022

Geometric discrepancy: 0.0858

The information below is about HL_7RQB_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5D8B|1|VC|G|712
5D8B|1|VC|A|712|||B
5D8B|1|VC|G|713
5D8B|1|VC|U|714
5D8B|1|VC|G|715
5D8B|1|VC|A|716
5D8B|1|VC|G|717
5D8B|1|VC|A|718
5D8B|1|VC|C|719

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L17

Chain PA

30S ribosomal protein S15

Chain RA

30S ribosomal protein S17

Chain UC

Small subunit ribosomal RNA; SSU rRNA