HL_5D8B_068

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

5D8B|1|VC|A|781, 5D8B|1|VC|A|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_068 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1474

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5D8B|1|VC|U|779
5D8B|1|VC|G|780
5D8B|1|VC|A|781
5D8B|1|VC|A|782
5D8B|1|VC|A|783
5D8B|1|VC|A|784
5D8B|1|VC|G|785

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2