HL_5D8B_071

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

5D8B|1|VC|U|958, 5D8B|1|VC|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_071 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1139

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5D8B|1|VC|C|955
5D8B|1|VC|G|956
5D8B|1|VC|A|957
5D8B|1|VC|U|958
5D8B|1|VC|A|959
5D8B|1|VC|A|960
5D8B|1|VC|C|961
5D8B|1|VC|G|962

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain WC

5S ribosomal RNA; 5S rRNA