HL_5D8B_086

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5D8B|1|VC|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_086 not in the Motif Atlas

Homologous match to HL_7RQB_042

Geometric discrepancy: 0.1068

The information below is about HL_7RQB_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03562.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

56

Unit IDs

5D8B|1|VC|C|1691
5D8B|1|VC|U|1692
5D8B|1|VC|U|1693
5D8B|1|VC|C|1694
5D8B|1|VC|G|1695
5D8B|1|VC|G|1696

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2

Chain UC

Small subunit ribosomal RNA; SSU rRNA