HL_5D8B_092

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

5D8B|1|VC|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_092 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1345

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5D8B|1|VC|G|1910
5D8B|1|VC|U|1911
5D8B|1|VC|A|1912
5D8B|1|VC|A|1913
5D8B|1|VC|C|1914
5D8B|1|VC|U|1915
5D8B|1|VC|A|1916
5D8B|1|VC|U|1917
5D8B|1|VC|A|1918
5D8B|1|VC|A|1919
5D8B|1|VC|C|1920

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain ED

Transfer RNA; tRNA

Chain UC

Small subunit ribosomal RNA; SSU rRNA