HL_5D8B_101

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CCUGCAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_101 not in the Motif Atlas

Homologous match to HL_7RQB_057

Geometric discrepancy: 0.0979

The information below is about HL_7RQB_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

5D8B|1|VC|C|2355
5D8B|1|VC|C|2356
5D8B|1|VC|U|2357
5D8B|1|VC|G|2358
5D8B|1|VC|C|2359
5D8B|1|VC|A|2360
5D8B|1|VC|A|2361
5D8B|1|VC|G|2362

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain BA

50S ribosomal protein L35

Chain J

50S ribosomal protein L15

Chain U

50S ribosomal protein L27