HL_5D8B_104

3D structure

PDB id

5D8B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of T. thermophilus ribosome containing a P-site wobble mismatch

Experimental method

X-RAY DIFFRACTION

Resolution

3.63 Å

Loop

Sequence

CGUCCACAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5D8B_104 not in the Motif Atlas

Homologous match to HL_7A0S_059

Geometric discrepancy: 0.3192

The information below is about HL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5D8B|1|VC|C|2471
5D8B|1|VC|G|2472
5D8B|1|VC|U|2473
5D8B|1|VC|C|2474
5D8B|1|VC|C|2475
5D8B|1|VC|A|2476
5D8B|1|VC|C|2477
5D8B|1|VC|A|2478
5D8B|1|VC|G|2479

Current chains

Chain VC

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L6